Add xrd-functions

beamtime/xrd/__init__.py

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+from . import io, plot

beamtime/xrd/io.py

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+import fabio, pyFAI
+import numpy as np
+import os
+
+
+def get_image_array(path):
+
+    image = fabio.open(path)
+    image_array = image.data
+
+    return image_array
+
+
+def integrate_1d(path, calibrant, bins, options):
+
+    required_options = ['unit', 'extension']
+
+    default_options = {'unit': '2th_deg', 'extension': '_integrated.dat'}
+
+    if not options:
+        options = default_options
+    
+    else:
+        for option in required_options:
+            if option not in options.keys():
+                options[option] = default_options[option]
+    
+    
+    image = get_image_array(path)
+    ai = pyFAI.load(calibrant)
+
+    filename = os.path.split(path)[-1].split('.')[0] + options['extension']
+
+    res = ai.integrate1d(image, bins, unit=options['unit'], filename=filename)
+
+    
+
+
+
+def view_integrator(calibrant):
+    ''' Prints out information about the azimuthal integrator
+    
+    Input:
+    calibrant: Path to the azimuthal integrator file (.PONI)
+    
+    Output:
+    None'''
+
+    ai = pyFAI.load(calibrant)
+
+    print("pyFAI version:", pyFAI.version)
+    print("\nIntegrator: \n", ai)
+
+

beamtime/xrd/plot.py

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+import matplotlib.pyplot as plt
+import numpy