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Change which chamber is used for transmission

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This commit is contained in:
rasmusthog 2022-10-24 20:58:22 +02:00
parent fd73dc577f
commit 8fafdefc71
1 changed files with 3 additions and 2 deletions
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5
nafuma/xanes/io.py
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@ -301,7 +301,8 @@ def read_data(data: dict, options={}) -> pd.DataFrame:
required_options = ['adjust', 'mode']
default_options = {
'adjust': 0,
'mode': 'fluoresence'
'mode': 'fluoresence',
'active_roi': None
}
options = aux.update_options(options=options, required_options=required_options, default_options=default_options)
@ -328,7 +329,7 @@ def read_data(data: dict, options={}) -> pd.DataFrame:
scan_data = scan_data[options['active_roi']]
elif options['mode'] == 'transmission':
scan_data = scan_data['MonEx'] / scan_data['Ion2']
scan_data = scan_data['MonEx'] / scan_data['Ion1']
xanes_data = pd.concat([xanes_data, scan_data], axis=1)