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Add choice to load transmission data

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This commit is contained in:
rasmusvt 2022-08-08 16:40:45 +02:00
parent c67629bef6
commit 9cda7694d0
1 changed files with 12 additions and 7 deletions
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9
nafuma/xanes/io.py
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@ -189,9 +189,10 @@ def read_data(data: dict, options={}) -> pd.DataFrame:
# FIXME Handle the case when dataseries are not the same size # FIXME Handle the case when dataseries are not the same size
# FIXME Add possibility to extract TIME (for operando runs) and Blower Temp (for variable temperature runs) # FIXME Add possibility to extract TIME (for operando runs) and Blower Temp (for variable temperature runs)
# FIXME Add possibility to iport transmission data # FIXME Add possibility to iport transmission data
required_options = ['adjust'] required_options = ['adjust', 'mode']
default_options = { default_options = {
'adjust': 0 'adjust': 0,
'mode': 'fluoresence'
} }
options = aux.update_options(options=options, required_options=required_options, default_options=default_options) options = aux.update_options(options=options, required_options=required_options, default_options=default_options)
@ -211,11 +212,15 @@ def read_data(data: dict, options={}) -> pd.DataFrame:
scan_data = pd.read_csv(filename, skiprows=1) scan_data = pd.read_csv(filename, skiprows=1)
if options['mode'] == 'fluoresence':
if not options['active_roi']: if not options['active_roi']:
scan_data = scan_data[[determine_active_roi(scan_data)]] scan_data = scan_data[[determine_active_roi(scan_data)]]
else: else:
scan_data = scan_data[options['active_roi']] scan_data = scan_data[options['active_roi']]
elif options['mode'] == 'transmission':
scan_data = scan_data['Ion2'] / scan_data['Ion1']
xanes_data = pd.concat([xanes_data, scan_data], axis=1) xanes_data = pd.concat([xanes_data, scan_data], axis=1)