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Short term fix for heatmap generation with beamline data

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This commit is contained in:
rasmusvt 2022-08-26 13:24:17 +02:00
parent 7285f47db3
commit 9ed675b8cb
1 changed files with 25 additions and 15 deletions
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40
nafuma/xrd/plot.py
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@ -362,6 +362,10 @@ def generate_heatmap(data, options={}):
if options['increase_contrast']: if options['increase_contrast']:
if d['I'].min() < 0:
d['I'] = d['I'] - d['I'].min()
d['I'] = d['I']**(1/options['contrast_factor']) d['I'] = d['I']**(1/options['contrast_factor'])
twotheta = np.append(twotheta, d['2th'].to_numpy()) twotheta = np.append(twotheta, d['2th'].to_numpy())
@ -418,23 +422,29 @@ def generate_heatmap(data, options={}):
scan_numbers = [] scan_numbers = []
temperatures = [] temperatures = []
for i, filename in enumerate(data['path']):
scan_numbers.append(i) # FIXME This is a very bad check for whether it is HTXRD or not - it bascailly just excludes any files that has a .poni-file passed. Make more rigorous in future!
temperatures.append(xrd.io.read_metadata_from_xy(filename)['temperature']) if not 'calibrant' in data.keys():
for i, filename in enumerate(data['path']):
scan_numbers.append(i)
temperatures.append(xrd.io.read_metadata_from_xy(filename)['temperature'])
yticks = scan_numbers[0::options['heatmap_y_tick_locators'][0]]
yticks.append(scan_numbers[-1])
if not temperatures[0]:
yticklabels = yticks
options['heatmap.ylabel'] = 'Scan number'
options['heatmap.yunit'] = None
else:
yticklabels = temperatures[0::options['heatmap_y_tick_locators'][0]]
yticklabels.append(temperatures[-1])
options['heatmap.ylabel'] = 'Temperature'
options['heatmap.yunit'] = '$^\circ$C'
yticks = scan_numbers[0::options['heatmap_y_tick_locators'][0]]
yticks.append(scan_numbers[-1])
if not temperatures[0]:
yticklabels = yticks
options['heatmap.ylabel'] = 'Scan number'
options['heatmap.yunit'] = None
else: else:
yticklabels = temperatures[0::options['heatmap_y_tick_locators'][0]] yticks, yticklabels = None, None
yticklabels.append(temperatures[-1])
options['heatmap.ylabel'] = 'Temperature'
options['heatmap.yunit'] = '$^\circ$C'