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Add manual choice of active roi

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This commit is contained in:
rasmusvt 2022-07-05 10:55:39 +02:00
parent b5cac158a4
commit da7099a924
1 changed files with 7 additions and 2 deletions
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7
nafuma/xanes/io.py
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@ -12,7 +12,7 @@ def split_scan_data(data: dict, options={}) -> list:
As of now only picks out xmap_rois (fluoresence mode) and for Mn, Fe, Co and Ni K-edges.''' As of now only picks out xmap_rois (fluoresence mode) and for Mn, Fe, Co and Ni K-edges.'''
required_options = ['log', 'logfile', 'save', 'save_folder', 'replace', 'add_rois', 'return'] required_options = ['log', 'logfile', 'save', 'save_folder', 'replace', 'active_roi', 'add_rois', 'return']
default_options = { default_options = {
'log': False, 'log': False,
@ -20,6 +20,7 @@ def split_scan_data(data: dict, options={}) -> list:
'save': False, # whether to save the files or not 'save': False, # whether to save the files or not
'save_folder': '.', # root folder of where to save the files 'save_folder': '.', # root folder of where to save the files
'replace': False, # whether to replace the files if they already exist 'replace': False, # whether to replace the files if they already exist
'active_roi': None,
'add_rois': False, # Whether to add the rois of individual scans of the same edge together 'add_rois': False, # Whether to add the rois of individual scans of the same edge together
'return': True 'return': True
} }
@ -200,7 +201,11 @@ def read_data(data: dict, options={}) -> pd.DataFrame:
scan_data = pd.read_csv(filename) scan_data = pd.read_csv(filename)
if not options['active_roi']:
scan_data = scan_data[[determine_active_roi(scan_data)]] scan_data = scan_data[[determine_active_roi(scan_data)]]
else:
scan_data = scan_data[options['active_roi']]
xanes_data = pd.concat([xanes_data, scan_data], axis=1) xanes_data = pd.concat([xanes_data, scan_data], axis=1)